SPOT allows one to find frequent patterns from a set of biological sequences.

The algorithm implements computationally optimized algorithms to extract all patterns not longer than a given length and returns the patterns that frequently occurs in the sequences.


Availability

SPOT web interface

References:

Visconti A., SPOT: un algoritmo per l'estrazione e l'analisi di pattern da sequenze, Master Thesis, July 2008.

Developers:

Visconti A.